Welcome to the documentation for alevin-fry

What is alevin-fry?

Alevin-fry is a program exposing a suite of tools for single-cell sequencing analysis. It makes use of the selective-alignment and barcode processing framework of alevin.

Contents:

• Building
• Getting Started
  • Running the alevin-fry pipeline
• generate-permit-list
  • output
• collate
  • output
• quant
  • output
• License

Indices and tables

• Index
• Module Index
• Search Page