alevin-fry commands

The alevin-fry program exposes a number of different commands that are responsible for exposing different capabilities and performing different steps of the processing pipeline. The list of current and valid are documented below.

• atac
  • generate-permit-list (atac)
    • output
  • sort (atac)
    • output
• generate-permit-list
  • output
• collate
  • output
• quant
  • output
• infer
  • output